PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032415-PA
Common NameOsI_32504
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 189aa    MW: 20909 Da    PI: 9.6752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032415-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-122470455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       h ++Er+RR+++ + f +L +++P+      +K +K+++L  ++eY+++L+
  BGIOSGA032415-PA 24 EHVIAERKRREKMHQQFTTLASIVPEI-----TKTDKVSVLGSTIEYVHHLR 70
                      699***********************7.....6*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6022069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-152478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-152487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-92469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-102574No hitNo description
SMARTSM003531.9E-122675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTKFCSPLSE MKRGGRRATS SMQEHVIAER KRREKMHQQF TTLASIVPEI TKTDKVSVLG  60
STIEYVHHLR ERVKVLQDIQ SMGSTQPPIS DARSRAGSGD DGNNNEVEIK VEANLQGTTV  120
LLRVVCPEKK GVLIKLLTEL EKLGLSTMNT NVVPFADSSL NITITAQIDN GSCTTVELVK  180
NLKSTLRNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERKRRE
22934RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613484.11e-124PREDICTED: transcription factor bHLH18-like
TrEMBLB8BFJ21e-138B8BFJ2_ORYSI; Uncharacterized protein
STRINGBGIOSGA032415-PA1e-137(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-29bHLH family protein